We just released SQLiteManager 4.0.8 which address all know bugs.
Please note that we have also submitted 4.0.8 to the Mac App Store where also all sandbox related issues are fixed.

Release notes for this version:

  1. Added support for hex encryption keys.
  2. Several bugs fixed.
  3. Fixed Import/Export issues.
  4. Improved Export performance.
  5. Improved Bug/Crash reporter.
  6. Various performance improvements.

You can download the new version from: http://www.sqlabs.com/sqlitemanager/