We just released SQLiteManager 4.6.8 release with the following changes:

  1. Fix for WITH queries.
  2. Updated FTC.
  3. Fix a crash issue.
  4. Improved HiDPI support.
  5. New Windows 64bit build.
  6. Several other internal enhancements and fixes.

This is a recommended upgrade.
You can download this version from: http://www.sqlabs.com/sqlitemanager/